Publications
Papers
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M. Chonofsky, S.H.P. de Oliveira, K. Krawczyk, C. Deane. The evolution of contact prediction: evidence that contact selection in statistical contact prediction is changing Bioinformatics, btz16, 6 November 2019. [show abstract] [full text]
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A.K. Drukier, Ch. Cantor, M. Chonofsky, G.M. Church, R.L. Fagaly, K. Freese, A. Lopez, T. Sano, C. Savage, W.P. Wong, New class of biological detectors for WIMPs, Int. J. Mod. Phys. A, 29 (19), 1443007 (2014). [show abstract] [pdf]
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Downes DJ, Chonofsky M, Tan K, Pfannenstiel BT, Reck-Peterson SL, Todd RB. (2014) Characterization of the Mutagenic Spectrum of 4-Nitroquinoline 1-Oxide (4-NQO) in Aspergillus nidulans by Whole Genome Sequencing. G3 4: 2483-2492. [show abstract] [full text] [pdf]
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Tan K, Roberts AJ, Chonofsky M, Egan MJ, Reck-Peterson SL. (2014) A microscopy-based screen employing multiplex genome sequencing identifies cargo-specific requirements for dynein velocity. Mol. Biol. Cell 25: 669-678. [show abstract] [pdf] [code]
Conference proceedings and talks
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Tan K, Roberts A, Egan M, Chonofsky M, Reck-Peterson SL. Whole-genome sequencing identifies novel alleles of genes required for organelle distribution and motility in Aspergillus nidulans. 27th Fungal Genetics Conference, March 2013. [show abstract]
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S. Reck-Peterson S, Tan K, Egan M, Chonofsky M, Roberts A. Novel alleles of genes required for organelle distribution and motility in Aspergillus nidulans: a whole-genome sequencing approach. ASCB 2012. [show abstract]
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Chonofsky, M. A new clustering algorithm to improve motor protein tracking. Clare Research Symposium, March 2012. [show abstract]
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Chonofsky, M. The phylogenetic SOWH test: simulation assessment and a new alternative. Clare Research Symposium, March 2011. [show abstract]
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Rai, H., Chonofsky, M., Kelch, D., Cronn, R., Parks, M., Nagalingum, N., et al. Generic And Familial Relationships Within Conifers Inferred From Nuclear Data. The annual conference of the Botany Society of America, July 2009. [show abstract]